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Alex Soupir
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Alex Soupir
Selected Work
Software Packages
Competencies
Videos
Consultation
Conferences
Selected Work
Software Packages
Competencies
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Consultation
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  • Bioinformatics |
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  • Spatial Clustering with spatialTIME - Understanding Ripley's K and Nearest Neighbor G
    • Fun Projects,
    • 1/1/24

    Spatial Clustering with spatialTIME - Understanding Ripley's K and Nearest Neighbor G

  • Spatial Transcriptomics - Part 6.2: Spatial Permutations of High Scores
    • Bioinformatics,
    • 1/12/24

    Spatial Transcriptomics - Part 6.2: Spatial Permutations of High Scores

  • Spatial Transcriptomics - Part 6.1: Spatial Gene Set Enrichment Analysis
    • Bioinformatics,
    • 1/10/24

    Spatial Transcriptomics - Part 6.1: Spatial Gene Set Enrichment Analysis

  • Spatial Transcriptomics - Part 5: Univariate Spatial Clustering Calculation
    • Bioinformatics,
    • 12/31/23

    Spatial Transcriptomics - Part 5: Univariate Spatial Clustering Calculation

    Using “spatialTIME” to calculate univariate clustering of unsupervised cell types

  • Assembling First Server Rack - Vivo 12U
    • Fun Projects,
    • 12/27/23

    Assembling First Server Rack - Vivo 12U

  • Spatial Transcriptomics - Part 4: Unsupervised InSituType
    • Bioinformatics,
    • 12/27/23

    Spatial Transcriptomics - Part 4: Unsupervised InSituType

  • Spatial Transcriptomics  - Part 3: Normalization and Dimension Reduction
    • Bioinformatics,
    • 12/27/23

    Spatial Transcriptomics - Part 3: Normalization and Dimension Reduction

  • Spatial Transcriptomics - Part 2: Exploring Seurat Object
    • Bioinformatics,
    • 12/27/23

    Spatial Transcriptomics - Part 2: Exploring Seurat Object

  • Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics
    • Bioinformatics,
    • 10/18/21

    Spatial Transcriptomics Intro - Part 1: What Is Spatial Transcriptomics

    Introduction to spatially resolved transcriptomics

  • Creating Simple Data Transformation API with R/RStudio
    • Bioinformatics,
    • 12/27/23

    Creating Simple Data Transformation API with R/RStudio

  • Bioinformatics - Setting Up UseGalaxy Locally! (Timestamps)
    • Bioinformatics,
    • 12/27/23

    Bioinformatics - Setting Up UseGalaxy Locally! (Timestamps)

  • Bioinformatics - Identifying New RNA-seq Splice Junctions (Timestamps)
    • Bioinformatics,
    • 12/27/23

    Bioinformatics - Identifying New RNA-seq Splice Junctions (Timestamps)

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